Tunicate Web Portal

jjjjjjGENOME BROWSER

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  • ANISEED

The Aniseed genome browser is cross linked to the database. Information displayed includes JGI, ENSEMBL and Kyotograil2005 gene models, TIGR EST clusters and predicted non-coding miRNA. It also displays the conservation profile between the two sequenced ciona genomes (Ciona intestinalis and Ciona savignyi) as well as cis-regulatory sequences supported by Aniseed.

http://crfb.univ-mrs.fr/ciona-bin/gbrowse/intestinalis/

  • ENSEMBL

Contact: Javier Herrero Sanchez (jherrero@ebi.ac.uk) +44 1223 494458
http://www.ebi.ac.uk/Information/Staff/person_maintx.php?s_person_id=487

http://www.ensembl.org/index.html

  • GHOST

http://hoya.zool.kyoto-u.ac.jp/cgi-bin/gbrowse/ci

  • JGI

http://genome.jgi-psf.org/

  • Modified UCSC at Gif

A copy of the UCSC browser with an improved annotation: We've added all gene models (JGI v1.0 and 2.0, Tigr, ENSEMBL intestinalis and savignyi, Kyotograil2005 and various ab-initio predictions), direct links to in-situs, Vista-plots and -regions, human orthologs from Ensembl and a lot of other, blast-able data).

http://genome.ciona.cnrs-gif.fr

  • UCSC

http://genome.ucsc.edu/cgi-bin

General databases

Anatomy

Genome browser

Cis regulatory region

Gene expression

ESTs

Mapping of transcript 5'end

Microarray probe set

Protein

Ascidian labs

Additionnal links