Tunicate Web Portal

GENOME BROWSER

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  • ANISEED

The ANISEED genome browser is cross linked to the database. Information displayed includes JGI, ENSEMBL and Kyotograil2005 gene models, TIGR EST clusters and predicted non-coding miRNA. It also displays the conservation profile between the two sequenced ciona genomes (Ciona intestinalis and Ciona savignyi) as well as cis-regulatory sequences supported by Aniseed.

http://www.aniseed.cnrs.fr/gb2/gbrowse/ciona_intestinalis_v3

  • ENSEMBL

Contact: Javier Herrero Sanchez (jherrero@ebi.ac.uk) +44 1223 494458
http://www.ebi.ac.uk/Information/Staff/person_maintx.php?s_person_id=487

http://www.ensembl.org/index.html

  • GHOST

Ghost is a database providing information of genomes and cDNAs of Ciona intestinalis and Ciona savignyi, and gene expression data of Ciona intestinalis. This database started as a Ciona EST database at 2000, and after we determined the genome sequences, the database was changed to be based on the genome sequences. (To access the database, please use the following ID and password, ID: guest, PASSWORD: welcome)

http://hoya.zool.kyoto-u.ac.jp/cgi-bin/gbrowse/kh (Ciona intestinalis)
http://hoya.zool.kyoto-u.ac.jp/cgi-bin/gbrowse/cs (Ciona savignyi)

  • JGI

http://genome.jgi-psf.org/

  • Modified UCSC at Gif

A copy of the UCSC browser with an improved annotation: We've added all gene models (JGI v1.0 and 2.0, Tigr, ENSEMBL intestinalis and savignyi, Kyotograil2005 and various ab-initio predictions), direct links to in-situs, Vista-plots and -regions, human orthologs from Ensembl and a lot of other, blast-able data).

http://genome.ciona.cnrs-gif.fr

  • UCSC

http://genome.ucsc.edu/cgi-bin

General databases

Anatomy

Genome browser

Cis regulatory regions

Gene expression

ESTs

Mapping of transcript 5'end

Microarray probe set

Proteomics

Transgenic line

Chemical compounds

Ascidian old papers

Ascidian labs

Additionnal links

Meetings